IL_7PJS_124

3D structure

PDB id

7PJS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S ribosome with tRNAs in the classical pre-translocation state and apramycin (C)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

GAUUAG*CGACGAUC

Length

14 nucleotides

Bulged bases

7PJS|1|a|U|244, 7PJS|1|a|C|280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PJS_124 not in the Motif Atlas

Homologous match to IL_5J7L_014

Geometric discrepancy: 0.073

The information below is about IL_5J7L_014

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_46174.3

Basepair signature

cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

Number of instances in this motif group

5

Unit IDs

7PJS|1|a|G|242
7PJS|1|a|A|243
7PJS|1|a|U|244
7PJS|1|a|U|245
7PJS|1|a|A|246
7PJS|1|a|G|247
*
7PJS|1|a|C|277
7PJS|1|a|G|278
7PJS|1|a|A|279
7PJS|1|a|C|280
7PJS|1|a|G|281
7PJS|1|a|A|282
7PJS|1|a|U|283
7PJS|1|a|C|284

Current chains

Chain a

16S ribosomal RNA

Nearby chains