IL_7PJS_143

3D structure

PDB id

7PJS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S ribosome with tRNAs in the classical pre-translocation state and apramycin (C)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PJS_143 not in the Motif Atlas

Homologous match to IL_5J7L_387

Geometric discrepancy: 0.0962

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

7PJS|1|A|U|1851
7PJS|1|A|U|1852
7PJS|1|A|A|1853
7PJS|1|A|A|1854
7PJS|1|A|U|1855
7PJS|1|A|U|1856
7PJS|1|A|G|1857
7PJS|1|A|A|1858
7PJS|1|A|U|1859
7PJS|1|A|G|1860
*
7PJS|1|A|U|1882
7PJS|1|A|U|1883
7PJS|1|A|G|1884
7PJS|1|A|A|1885
7PJS|1|A|U|1886
7PJS|1|A|C|1887
7PJS|1|A|G|1888
7PJS|1|A|A|1889
7PJS|1|A|A|1890
7PJS|1|A|G|1891

Current chains

Chain A

23S ribosomal RNA

Nearby chains