IL_7PJT_040

3D structure

PDB id

7PJT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S ribosome with tRNAs in hybrid state 1 (H1)

Experimental method

ELECTRON MICROSCOPY

Resolution

6 Å

Loop

Sequence

CUGCGAAG*UGGAG

Length

13 nucleotides

Bulged bases

7PJT|1|A|C|1211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PJT_040 not in the Motif Atlas

Homologous match to IL_4WF9_046

Geometric discrepancy: 0.2511

The information below is about IL_4WF9_046

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_90775.2

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

30

Unit IDs

7PJT|1|A|C|1208
7PJT|1|A|U|1209
7PJT|1|A|G|1210
7PJT|1|A|C|1211
7PJT|1|A|G|1212
7PJT|1|A|A|1213
7PJT|1|A|A|1214
7PJT|1|A|G|1215
*
7PJT|1|A|U|1234
7PJT|1|A|G|1235
7PJT|1|A|G|1236
7PJT|1|A|A|1237
7PJT|1|A|G|1238

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain Q

50S ribosomal protein L20