IL_7PJT_093

3D structure

PDB id

7PJT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S ribosome with tRNAs in hybrid state 1 (H1)

Experimental method

ELECTRON MICROSCOPY

Resolution

6 Å

Loop

Sequence

CUGAG*CGAGAUGAG

Length

14 nucleotides

Bulged bases

7PJT|1|A|G|2780

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PJT_093 not in the Motif Atlas

Homologous match to IL_7RQB_102

Geometric discrepancy: 0.1796

The information below is about IL_7RQB_102

Detailed Annotation

tSH-tHS-tHW

Broad Annotation

tSH-tHS-tHW

Motif group

IL_04638.1

Basepair signature

cWW-tSH-tHW-tHS-cSH-cWW-L

Number of instances in this motif group

5

Unit IDs

7PJT|1|A|C|2636
7PJT|1|A|U|2637
7PJT|1|A|G|2638
7PJT|1|A|A|2639
7PJT|1|A|G|2640
*
7PJT|1|A|C|2774
7PJT|1|A|G|2775
7PJT|1|A|A|2776
7PJT|1|A|G|2777
7PJT|1|A|A|2778
7PJT|1|A|U|2779
7PJT|1|A|G|2780
7PJT|1|A|A|2781
7PJT|1|A|G|2782

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain J

50S ribosomal protein L13