IL_7PJV_180

3D structure

PDB id

7PJV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S-EF-G-GDP-Pi ribosome complex with tRNAs in hybrid state 1 (H1-EF-G-GDP-Pi)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGAACUAGG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PJV_180 not in the Motif Atlas

Homologous match to IL_5J7L_386

Geometric discrepancy: 0.0712

The information below is about IL_5J7L_386

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22854.4

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

7

Unit IDs

7PJV|1|A|G|1666
7PJV|1|A|G|1667
7PJV|1|A|A|1668
7PJV|1|A|A|1669
7PJV|1|A|C|1670
7PJV|1|A|U|1671
7PJV|1|A|A|1672
7PJV|1|A|G|1673
7PJV|1|A|G|1674
*
7PJV|1|A|C|1990
7PJV|1|A|U|1991
7PJV|1|A|G|1992
7PJV|1|A|U|1993
7PJV|1|A|C|1994

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain K

50S ribosomal protein L14