IL_7PJV_181

3D structure

PDB id

7PJV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S-EF-G-GDP-Pi ribosome complex with tRNAs in hybrid state 1 (H1-EF-G-GDP-Pi)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PJV_181 not in the Motif Atlas

Homologous match to IL_5J7L_387

Geometric discrepancy: 0.1117

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

7PJV|1|A|U|1851
7PJV|1|A|U|1852
7PJV|1|A|A|1853
7PJV|1|A|A|1854
7PJV|1|A|U|1855
7PJV|1|A|U|1856
7PJV|1|A|G|1857
7PJV|1|A|A|1858
7PJV|1|A|U|1859
7PJV|1|A|G|1860
*
7PJV|1|A|U|1882
7PJV|1|A|U|1883
7PJV|1|A|G|1884
7PJV|1|A|A|1885
7PJV|1|A|U|1886
7PJV|1|A|C|1887
7PJV|1|A|G|1888
7PJV|1|A|A|1889
7PJV|1|A|A|1890
7PJV|1|A|G|1891

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain v

Transfer RNA; tRNA