IL_7PJW_016

3D structure

PDB id

7PJW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S-EF-G-GDP-Pi ribosome complex with tRNAs in hybrid state 2 (H2-EF-G-GDP-Pi)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

7PJW|1|A|G|801, 7PJW|1|A|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PJW_016 not in the Motif Atlas

Geometric match to IL_5J7L_260

Geometric discrepancy: 0.1366

The information below is about IL_5J7L_260

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_54041.2

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

7PJW|1|A|G|674
7PJW|1|A|A|675
7PJW|1|A|A|676
7PJW|1|A|A|677
7PJW|1|A|C|678
*
7PJW|1|A|G|799
7PJW|1|A|A|800
7PJW|1|A|G|801
7PJW|1|A|A|802
7PJW|1|A|U|803
7PJW|1|A|A|804
7PJW|1|A|G|805
7PJW|1|A|C|806

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain L

50S ribosomal protein L15