3D structure

PDB id
7PJW (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the 70S-EF-G-GDP-Pi ribosome complex with tRNAs in hybrid state 2 (H2-EF-G-GDP-Pi)
Experimental method
ELECTRON MICROSCOPY
Resolution
4 Å

Loop

Sequence
CCAAC*GGG
Length
8 nucleotides
Bulged bases
7PJW|1|A|G|1332
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7PJW_046 not in the Motif Atlas
Homologous match to IL_5J7L_291
Geometric discrepancy: 0.2049
The information below is about IL_5J7L_291
Detailed Annotation
C-loop
Broad Annotation
No text annotation
Motif group
IL_63596.11
Basepair signature
cWW-cWS-cSH-tWH-cWW-L
Number of instances in this motif group
19

Unit IDs

7PJW|1|A|C|1319
7PJW|1|A|C|1320
7PJW|1|A|A|1321
7PJW|1|A|A|1322
7PJW|1|A|C|1323
*
7PJW|1|A|G|1331
7PJW|1|A|G|1332
7PJW|1|A|G|1333

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain S
50S ribosomal protein L22

Coloring options:


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