3D structure

PDB id
7PJW (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the 70S-EF-G-GDP-Pi ribosome complex with tRNAs in hybrid state 2 (H2-EF-G-GDP-Pi)
Experimental method
ELECTRON MICROSCOPY
Resolution
4 Å

Loop

Sequence
GGAUAAC*GCUAAUAC
Length
15 nucleotides
Bulged bases
7PJW|1|a|U|173
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7PJW_121 not in the Motif Atlas
Homologous match to IL_5J7L_012
Geometric discrepancy: 0.177
The information below is about IL_5J7L_012
Detailed Annotation
tWH-tWH-tHW-tHW
Broad Annotation
No text annotation
Motif group
IL_80604.6
Basepair signature
cWW-cWW-tWH-tWH-tHW-tHW-cWW
Number of instances in this motif group
3

Unit IDs

7PJW|1|a|G|147
7PJW|1|a|G|148
7PJW|1|a|A|149
7PJW|1|a|U|150
7PJW|1|a|A|151
7PJW|1|a|A|152
7PJW|1|a|C|153
*
7PJW|1|a|G|168
7PJW|1|a|C|169
7PJW|1|a|U|170
7PJW|1|a|A|171
7PJW|1|a|A|172
7PJW|1|a|U|173
7PJW|1|a|A|174
7PJW|1|a|C|175

Current chains

Chain a
16S ribosomal RNA

Nearby chains

Chain t
30S ribosomal protein S20

Coloring options:


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