IL_7PJX_016

3D structure

PDB id

7PJX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S-EF-G-GDP ribosome complex with tRNAs in hybrid state 1 (H1-EF-G-GDP)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.5 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

7PJX|1|A|G|801, 7PJX|1|A|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PJX_016 not in the Motif Atlas

Homologous match to IL_5J7L_260

Geometric discrepancy: 0.0801

The information below is about IL_5J7L_260

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_54041.2

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

7PJX|1|A|G|674
7PJX|1|A|A|675
7PJX|1|A|A|676
7PJX|1|A|A|677
7PJX|1|A|C|678
*
7PJX|1|A|G|799
7PJX|1|A|A|800
7PJX|1|A|G|801
7PJX|1|A|A|802
7PJX|1|A|U|803
7PJX|1|A|A|804
7PJX|1|A|G|805
7PJX|1|A|C|806

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain L

50S ribosomal protein L15