IL_7PJX_042

3D structure

PDB id

7PJX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S-EF-G-GDP ribosome complex with tRNAs in hybrid state 1 (H1-EF-G-GDP)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.5 Å

Loop

Sequence

CUGCGAAG*UGGAG

Length

13 nucleotides

Bulged bases

7PJX|1|A|C|1211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PJX_042 not in the Motif Atlas

Homologous match to IL_5J7L_288

Geometric discrepancy: 0.0741

The information below is about IL_5J7L_288

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

7PJX|1|A|C|1208
7PJX|1|A|U|1209
7PJX|1|A|G|1210
7PJX|1|A|C|1211
7PJX|1|A|G|1212
7PJX|1|A|A|1213
7PJX|1|A|A|1214
7PJX|1|A|G|1215
*
7PJX|1|A|U|1234
7PJX|1|A|G|1235
7PJX|1|A|G|1236
7PJX|1|A|A|1237
7PJX|1|A|G|1238

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain Q

50S ribosomal protein L20