IL_7PJX_122

3D structure

PDB id

7PJX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S-EF-G-GDP ribosome complex with tRNAs in hybrid state 1 (H1-EF-G-GDP)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.5 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

7PJX|1|a|U|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PJX_122 not in the Motif Atlas

Homologous match to IL_5J7L_012

Geometric discrepancy: 0.1703

The information below is about IL_5J7L_012

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.6

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

3

Unit IDs

7PJX|1|a|G|147
7PJX|1|a|G|148
7PJX|1|a|A|149
7PJX|1|a|U|150
7PJX|1|a|A|151
7PJX|1|a|A|152
7PJX|1|a|C|153
*
7PJX|1|a|G|168
7PJX|1|a|C|169
7PJX|1|a|U|170
7PJX|1|a|A|171
7PJX|1|a|A|172
7PJX|1|a|U|173
7PJX|1|a|A|174
7PJX|1|a|C|175

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain t

30S ribosomal protein S20