IL_7PJX_153

3D structure

PDB id

7PJX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S-EF-G-GDP ribosome complex with tRNAs in hybrid state 1 (H1-EF-G-GDP)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.5 Å

Loop

Sequence

GACAU*AC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PJX_153 not in the Motif Atlas

Geometric match to IL_6CZR_151

Geometric discrepancy: 0.2072

The information below is about IL_6CZR_151

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_47078.2

Basepair signature

cWW-cWS-L-cWW-L

Number of instances in this motif group

6

Unit IDs

7PJX|1|a|G|993
7PJX|1|a|A|994
7PJX|1|a|C|995
7PJX|1|a|A|996
7PJX|1|a|U|997
*
7PJX|1|a|A|1044
7PJX|1|a|C|1045

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain n

30S ribosomal protein S14