3D structure

PDB id
7PJX (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the 70S-EF-G-GDP ribosome complex with tRNAs in hybrid state 1 (H1-EF-G-GDP)
Experimental method
ELECTRON MICROSCOPY
Resolution
6.5 Å

Loop

Sequence
G(4OC)CC*G(UR3)AAC
Length
9 nucleotides
Bulged bases
None detected
QA status
Modified nucleotides: 4OC, UR3

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7PJX_170 not in the Motif Atlas
Geometric match to IL_4V88_464
Geometric discrepancy: 0.1331
The information below is about IL_4V88_464
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_65718.1
Basepair signature
cWW-cSH-cWS-cWW-cWW
Number of instances in this motif group
5

Unit IDs

7PJX|1|a|G|1401
7PJX|1|a|4OC|1402
7PJX|1|a|C|1403
7PJX|1|a|C|1404
*
7PJX|1|a|G|1497
7PJX|1|a|UR3|1498
7PJX|1|a|A|1499
7PJX|1|a|A|1500
7PJX|1|a|C|1501

Current chains

Chain a
16S ribosomal RNA

Nearby chains

Chain A
Large subunit ribosomal RNA; LSU rRNA
Chain v
Transfer RNA; tRNA
Chain z
mRNA

Coloring options:


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