IL_7PJX_180

3D structure

PDB id

7PJX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S-EF-G-GDP ribosome complex with tRNAs in hybrid state 1 (H1-EF-G-GDP)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.5 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PJX_180 not in the Motif Atlas

Homologous match to IL_5J7L_387

Geometric discrepancy: 0.1117

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

7PJX|1|A|U|1851
7PJX|1|A|U|1852
7PJX|1|A|A|1853
7PJX|1|A|A|1854
7PJX|1|A|U|1855
7PJX|1|A|U|1856
7PJX|1|A|G|1857
7PJX|1|A|A|1858
7PJX|1|A|U|1859
7PJX|1|A|G|1860
*
7PJX|1|A|U|1882
7PJX|1|A|U|1883
7PJX|1|A|G|1884
7PJX|1|A|A|1885
7PJX|1|A|U|1886
7PJX|1|A|C|1887
7PJX|1|A|G|1888
7PJX|1|A|A|1889
7PJX|1|A|A|1890
7PJX|1|A|G|1891

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain v

Transfer RNA; tRNA