IL_7PJY_043

3D structure

PDB id

7PJY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S-EF-G-GDP ribosome complex with tRNAs in chimeric state 1 (CHI1-EF-G-GDP)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUGCGAAG*UGGAG

Length

13 nucleotides

Bulged bases

7PJY|1|A|C|1211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PJY_043 not in the Motif Atlas

Homologous match to IL_5J7L_288

Geometric discrepancy: 0.0893

The information below is about IL_5J7L_288

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

7PJY|1|A|C|1208
7PJY|1|A|U|1209
7PJY|1|A|G|1210
7PJY|1|A|C|1211
7PJY|1|A|G|1212
7PJY|1|A|A|1213
7PJY|1|A|A|1214
7PJY|1|A|G|1215
*
7PJY|1|A|U|1234
7PJY|1|A|G|1235
7PJY|1|A|G|1236
7PJY|1|A|A|1237
7PJY|1|A|G|1238

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain Q

50S ribosomal protein L20