IL_7PJY_089

3D structure

PDB id

7PJY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S-EF-G-GDP ribosome complex with tRNAs in chimeric state 1 (CHI1-EF-G-GDP)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AUA*UGUUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PJY_089 not in the Motif Atlas

Homologous match to IL_7A0S_086

Geometric discrepancy: 0.138

The information below is about IL_7A0S_086

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform with extra cWW

Motif group

IL_51387.3

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

21

Unit IDs

7PJY|1|A|A|2459
7PJY|1|A|U|2460
7PJY|1|A|A|2461
*
7PJY|1|A|U|2489
7PJY|1|A|G|2490
7PJY|1|A|U|2491
7PJY|1|A|U|2492
7PJY|1|A|U|2493

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain M

50S ribosomal protein L16