IL_7PJY_098

3D structure

PDB id

7PJY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S-EF-G-GDP ribosome complex with tRNAs in chimeric state 1 (CHI1-EF-G-GDP)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PJY_098 not in the Motif Atlas

Homologous match to IL_5J7L_346

Geometric discrepancy: 0.1024

The information below is about IL_5J7L_346

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.4

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

7PJY|1|A|C|2652
7PJY|1|A|U|2653
7PJY|1|A|A|2654
7PJY|1|A|G|2655
7PJY|1|A|U|2656
7PJY|1|A|A|2657
7PJY|1|A|C|2658
*
7PJY|1|A|G|2663
7PJY|1|A|G|2664
7PJY|1|A|A|2665
7PJY|1|A|C|2666
7PJY|1|A|C|2667
7PJY|1|A|G|2668

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain G

50S ribosomal protein L6

Chain x

Elongation factor G