IL_7PJY_183

3D structure

PDB id

7PJY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S-EF-G-GDP ribosome complex with tRNAs in chimeric state 1 (CHI1-EF-G-GDP)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PJY_183 not in the Motif Atlas

Homologous match to IL_5J7L_387

Geometric discrepancy: 0.1033

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

7PJY|1|A|U|1851
7PJY|1|A|U|1852
7PJY|1|A|A|1853
7PJY|1|A|A|1854
7PJY|1|A|U|1855
7PJY|1|A|U|1856
7PJY|1|A|G|1857
7PJY|1|A|A|1858
7PJY|1|A|U|1859
7PJY|1|A|G|1860
*
7PJY|1|A|U|1882
7PJY|1|A|U|1883
7PJY|1|A|G|1884
7PJY|1|A|A|1885
7PJY|1|A|U|1886
7PJY|1|A|C|1887
7PJY|1|A|G|1888
7PJY|1|A|A|1889
7PJY|1|A|A|1890
7PJY|1|A|G|1891

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain v

Transfer RNA; tRNA