IL_7PJZ_062

3D structure

PDB id

7PJZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S-EF-G-GDP ribosome complex with tRNAs in chimeric state 2 (CHI2-EF-G-GDP)

Experimental method

ELECTRON MICROSCOPY

Resolution

6 Å

Loop

Sequence

UAUGUAG*UGAAA

Length

12 nucleotides

Bulged bases

7PJZ|1|A|U|1714

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PJZ_062 not in the Motif Atlas

Homologous match to IL_5J7L_309

Geometric discrepancy: 0.2287

The information below is about IL_5J7L_309

Detailed Annotation

6x5 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_88269.4

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

7PJZ|1|A|U|1712
7PJZ|1|A|A|1713
7PJZ|1|A|U|1714
7PJZ|1|A|G|1715
7PJZ|1|A|U|1716
7PJZ|1|A|A|1717
7PJZ|1|A|G|1718
*
7PJZ|1|A|U|1742
7PJZ|1|A|G|1743
7PJZ|1|A|A|1744
7PJZ|1|A|A|1745
7PJZ|1|A|A|1746

Current chains

Chain A

23S ribosomal RNA

Nearby chains