IL_7PJZ_066

3D structure

PDB id

7PJZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S-EF-G-GDP ribosome complex with tRNAs in chimeric state 2 (CHI2-EF-G-GDP)

Experimental method

ELECTRON MICROSCOPY

Resolution

6 Å

Loop

Sequence

UGCAAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

7PJZ|1|A|A|1801, 7PJZ|1|A|C|1816, 7PJZ|1|A|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PJZ_066 not in the Motif Atlas

Homologous match to IL_7RQB_070

Geometric discrepancy: 0.1502

The information below is about IL_7RQB_070

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.3

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

7PJZ|1|A|U|1798
7PJZ|1|A|G|1799
7PJZ|1|A|C|1800
7PJZ|1|A|A|1801
7PJZ|1|A|A|1802
7PJZ|1|A|A|1803
7PJZ|1|A|C|1804
*
7PJZ|1|A|G|1813
7PJZ|1|A|G|1814
7PJZ|1|A|A|1815
7PJZ|1|A|C|1816
7PJZ|1|A|G|1817
7PJZ|1|A|U|1818
7PJZ|1|A|A|1819
7PJZ|1|A|U|1820
7PJZ|1|A|A|1821

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2

Chain a

Small subunit ribosomal RNA; SSU rRNA