IL_7PKQ_005

3D structure

PDB id

7PKQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Small subunit of the Chlamydomonas reinhardtii mitoribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

GAC*GC

Length

5 nucleotides

Bulged bases

7PKQ|1|2|A|14

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PKQ_005 not in the Motif Atlas

Geometric match to IL_4V88_409

Geometric discrepancy: 0.3352

The information below is about IL_4V88_409

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

7PKQ|1|2|G|13
7PKQ|1|2|A|14
7PKQ|1|2|C|15
*
7PKQ|1|2|G|25
7PKQ|1|2|C|26

Current chains

Chain 2

S2 rRNA

Nearby chains

Chain 1

S1 rRNA

Chain O

mS106

Chain P

mS107

Chain w

mS26

Chain z

mS34