IL_7PKQ_013
3D structure
- PDB id
- 7PKQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Small subunit of the Chlamydomonas reinhardtii mitoribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.2 Å
Loop
- Sequence
- GUGCCAG*CGGUAAAAC
- Length
- 16 nucleotides
- Bulged bases
- 7PKQ|1|3|A|44, 7PKQ|1|3|A|46
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7PKQ_013 not in the Motif Atlas
- Geometric match to IL_6CZR_133
- Geometric discrepancy: 0.3343
- The information below is about IL_6CZR_133
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_54177.3
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
7PKQ|1|3|G|27
7PKQ|1|3|U|28
7PKQ|1|3|G|29
7PKQ|1|3|C|30
7PKQ|1|3|C|31
7PKQ|1|3|A|32
7PKQ|1|3|G|33
*
7PKQ|1|3|C|40
7PKQ|1|3|G|41
7PKQ|1|3|G|42
7PKQ|1|3|U|43
7PKQ|1|3|A|44
7PKQ|1|3|A|45
7PKQ|1|3|A|46
7PKQ|1|3|A|47
7PKQ|1|3|C|48
Current chains
- Chain 3
- S3 rRNA
Nearby chains
- Chain 4
- Small subunit ribosomal RNA; SSU rRNA
- Chain c
- Ribosomal_S3_C domain-containing protein
- Chain l
- uS12m
Coloring options: