IL_7PKQ_020

3D structure

PDB id

7PKQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Small subunit of the Chlamydomonas reinhardtii mitoribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

UAAUA*UGGAA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PKQ_020 not in the Motif Atlas

Homologous match to IL_5J7L_361

Geometric discrepancy: 0.5298

The information below is about IL_5J7L_361

Detailed Annotation

Triple non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_49751.4

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

7PKQ|1|3|U|127
7PKQ|1|3|A|128
7PKQ|1|3|A|129
7PKQ|1|3|U|130
7PKQ|1|3|A|131
*
7PKQ|1|3|U|165
7PKQ|1|3|G|166
7PKQ|1|3|G|167
7PKQ|1|3|A|168
7PKQ|1|3|A|169

Current chains

Chain 3

S3 rRNA

Nearby chains

Chain f

Mitochondrial ribosomal protein S6

Chain k

uS11m

Chain r

bS18m