IL_7PKQ_027

3D structure

PDB id

7PKQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Small subunit of the Chlamydomonas reinhardtii mitoribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

CAGC*GUG

Length

7 nucleotides

Bulged bases

7PKQ|1|3|G|340

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PKQ_027 not in the Motif Atlas

Geometric match to IL_4V8Q_188

Geometric discrepancy: 0.3273

The information below is about IL_4V8Q_188

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_86319.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

269

Unit IDs

7PKQ|1|3|C|338
7PKQ|1|3|A|339
7PKQ|1|3|G|340
7PKQ|1|3|C|341
*
7PKQ|1|4|G|301
7PKQ|1|4|U|302
7PKQ|1|4|G|303

Current chains

Chain 3

S3 rRNA

Chain 4

S4 rRNA

Nearby chains

Chain e

S5 DRBM domain-containing protein