IL_7PKQ_034
3D structure
- PDB id
- 7PKQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Small subunit of the Chlamydomonas reinhardtii mitoribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.2 Å
Loop
- Sequence
- CGGAUU*AUGAAG
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7PKQ_034 not in the Motif Atlas
- Homologous match to IL_4LFB_055
- Geometric discrepancy: 0.1491
- The information below is about IL_4LFB_055
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_57885.3
- Basepair signature
- cWW-tSH-tSH-tHS-cWW-cWW
- Number of instances in this motif group
- 8
Unit IDs
7PKQ|1|4|C|168
7PKQ|1|4|G|169
7PKQ|1|4|G|170
7PKQ|1|4|A|171
7PKQ|1|4|U|172
7PKQ|1|4|U|173
*
7PKQ|1|4|A|240
7PKQ|1|4|U|241
7PKQ|1|4|G|242
7PKQ|1|4|A|243
7PKQ|1|4|A|244
7PKQ|1|4|G|245
Current chains
- Chain 4
- S4 rRNA
Nearby chains
- Chain 3
- Small subunit ribosomal RNA; SSU rRNA
- Chain m
- Mitochondrial ribosomal protein S13
- Chain u
- Plastid-specific ribosomal protein 4
- Chain x
- mS29
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