IL_7PKQ_039

3D structure

PDB id

7PKQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Small subunit of the Chlamydomonas reinhardtii mitoribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

CACC*GUAAG

Length

9 nucleotides

Bulged bases

7PKQ|1|4|A|404, 7PKQ|1|4|A|405

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PKQ_039 not in the Motif Atlas

Geometric match to IL_8CRE_469

Geometric discrepancy: 0.3836

The information below is about IL_8CRE_469

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_73099.1

Basepair signature

cWW-cHW-L-R-L-cWW

Number of instances in this motif group

3

Unit IDs

7PKQ|1|4|C|318
7PKQ|1|4|A|319
7PKQ|1|4|C|320
7PKQ|1|4|C|321
*
7PKQ|1|4|G|402
7PKQ|1|4|U|403
7PKQ|1|4|A|404
7PKQ|1|4|A|405
7PKQ|1|4|G|406

Current chains

Chain 4

S4 rRNA

Nearby chains

Chain 3

Small subunit ribosomal RNA; SSU rRNA

Chain l

uS12m