IL_7PKQ_054

3D structure

PDB id

7PKQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Small subunit of the Chlamydomonas reinhardtii mitoribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

UG*UAAA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PKQ_054 not in the Motif Atlas

Geometric match to IL_4WF9_049

Geometric discrepancy: 0.3485

The information below is about IL_4WF9_049

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

No text annotation

Motif group

IL_74641.2

Basepair signature

cWW-tSH-cWW-L

Number of instances in this motif group

33

Unit IDs

7PKQ|1|3|U|107
7PKQ|1|3|G|108
*
7PKQ|1|3|U|203
7PKQ|1|3|A|204
7PKQ|1|3|A|205
7PKQ|1|3|A|206

Current chains

Chain 3

S3 rRNA

Nearby chains

Chain h

uS8m

Chain o

uS15m

Chain q

uS17m

Chain w

mS26