IL_7PNX_041

3D structure

PDB id

7PNX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Assembly intermediate of human mitochondrial ribosome small subunit without mS37 in complex with RBFA and METTL15 conformation a

Experimental method

ELECTRON MICROSCOPY

Resolution

2.76 Å

Loop

Sequence

GUC*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PNX_041 not in the Motif Atlas

Geometric match to IL_5B2P_001

Geometric discrepancy: 0.1055

The information below is about IL_5B2P_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_71625.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

79

Unit IDs

7PNX|1|A|G|1489
7PNX|1|A|U|1490
7PNX|1|A|C|1491
*
7PNX|1|A|G|1559
7PNX|1|A|U|1560
7PNX|1|A|C|1561

Current chains

Chain A

12S mitochondrial rRNA

Nearby chains

Chain 3

Aurora kinase A-interacting protein

Chain J

28S ribosomal protein S12, mitochondrial

Chain b

12S rRNA N4-methylcytidine (m4C) methyltransferase