IL_7PO1_050

3D structure

PDB id

7PO1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Initiation complex of human mitochondrial ribosome small subunit with IF3

Experimental method

ELECTRON MICROSCOPY

Resolution

2.92 Å

Loop

Sequence

G(B8T)C(5MC)*GUAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: B8T, 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PO1_050 not in the Motif Atlas

Homologous match to IL_5J7L_059

Geometric discrepancy: 0.0784

The information below is about IL_5J7L_059

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65718.4

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

4

Unit IDs

7PO1|1|A|G|1485
7PO1|1|A|B8T|1486
7PO1|1|A|C|1487
7PO1|1|A|5MC|1488
*
7PO1|1|A|G|1562
7PO1|1|A|U|1563
7PO1|1|A|A|1564
7PO1|1|A|A|1565
7PO1|1|A|C|1566

Current chains

Chain A

12S mitochondrial rRNA

Nearby chains

Chain 3

Aurora kinase A-interacting protein

Chain 8

Mitochondrial translational initiation factor 3, isoform CRA_a