IL_7PO4_039

3D structure

PDB id

7PO4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Assembly intermediate of human mitochondrial ribosome large subunit (largely unfolded rRNA with MALSU1, L0R8F8 and ACP)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.56 Å

Loop

Sequence

CUAUG*CUAG

Length

9 nucleotides

Bulged bases

7PO4|1|A|U|2731

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PO4_039 not in the Motif Atlas

Geometric match to IL_5EW4_002

Geometric discrepancy: 0.3628

The information below is about IL_5EW4_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

7PO4|1|A|C|2728
7PO4|1|A|U|2729
7PO4|1|A|A|2730
7PO4|1|A|U|2731
7PO4|1|A|G|2732
*
7PO4|1|A|C|2929
7PO4|1|A|U|2930
7PO4|1|A|A|2931
7PO4|1|A|G|2932

Current chains

Chain A

16SrRNA

Nearby chains

Chain F

39S ribosomal protein L4, mitochondrial

Chain M

39S ribosomal protein L15, mitochondrial