IL_7PWG_027

3D structure

PDB id

7PWG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of large subunit of Giardia lamblia ribosome at 2.7 A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

GGCCG*CCCCC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PWG_027 not in the Motif Atlas

Homologous match to IL_8C3A_044

Geometric discrepancy: 0.1835

The information below is about IL_8C3A_044

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05145.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

13

Unit IDs

7PWG|1|1|G|718
7PWG|1|1|G|719
7PWG|1|1|C|720
7PWG|1|1|C|721
7PWG|1|1|G|722
*
7PWG|1|1|C|753
7PWG|1|1|C|754
7PWG|1|1|C|755
7PWG|1|1|C|756
7PWG|1|1|C|757

Current chains

Chain 1

rRNA 28S

Nearby chains

Chain D

Ribosomal protein L5

Chain I

Ribosomal protein L10