IL_7PWG_039

3D structure

PDB id

7PWG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of large subunit of Giardia lamblia ribosome at 2.7 A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

GCGCC*GGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PWG_039 not in the Motif Atlas

Geometric match to IL_4V9F_051

Geometric discrepancy: 0.1464

The information below is about IL_4V9F_051

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.12

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

22

Unit IDs

7PWG|1|1|G|1184
7PWG|1|1|C|1185
7PWG|1|1|G|1186
7PWG|1|1|C|1187
7PWG|1|1|C|1188
*
7PWG|1|1|G|1196
7PWG|1|1|G|1197
7PWG|1|1|C|1198

Current chains

Chain 1

rRNA 28S

Nearby chains

Chain P

Ribosomal protein L17

Chain R

Ribosomal protein L19

Chain l

Ribosomal protein L39