IL_7PWG_052

3D structure

PDB id

7PWG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of large subunit of Giardia lamblia ribosome at 2.7 A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

CGUAAC*GGAAAAG

Length

13 nucleotides

Bulged bases

7PWG|1|1|A|1562

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PWG_052 not in the Motif Atlas

Homologous match to IL_8C3A_084

Geometric discrepancy: 0.0845

The information below is about IL_8C3A_084

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65969.4

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

7PWG|1|1|C|1549
7PWG|1|1|G|1550
7PWG|1|1|U|1551
7PWG|1|1|A|1552
7PWG|1|1|A|1553
7PWG|1|1|C|1554
*
7PWG|1|1|G|1559
7PWG|1|1|G|1560
7PWG|1|1|A|1561
7PWG|1|1|A|1562
7PWG|1|1|A|1563
7PWG|1|1|A|1564
7PWG|1|1|G|1565

Current chains

Chain 1

rRNA 28S

Nearby chains

Chain p

Ribosomal protein L37a