IL_7PWG_058

3D structure

PDB id

7PWG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of large subunit of Giardia lamblia ribosome at 2.7 A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

GACCG*CCC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PWG_058 not in the Motif Atlas

Geometric match to IL_5T83_002

Geometric discrepancy: 0.2511

The information below is about IL_5T83_002

Detailed Annotation

8-nt loop receptor

Broad Annotation

Loop-receptor motif

Motif group

IL_83497.1

Basepair signature

cWW-L-R-cSH-cSH-cWW

Number of instances in this motif group

4

Unit IDs

7PWG|1|1|G|1693
7PWG|1|1|A|1694
7PWG|1|1|C|1695
7PWG|1|1|C|1696
7PWG|1|1|G|1697
*
7PWG|1|1|C|1722
7PWG|1|1|C|1723
7PWG|1|1|C|1724

Current chains

Chain 1

rRNA 28S

Nearby chains

Chain w

Transfer RNA; tRNA