IL_7PWG_081

3D structure

PDB id

7PWG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of large subunit of Giardia lamblia ribosome at 2.7 A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

CU*AUCG

Length

6 nucleotides

Bulged bases

7PWG|1|1|U|2362, 7PWG|1|1|C|2363

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PWG_081 not in the Motif Atlas

Geometric match to IL_4V9F_088

Geometric discrepancy: 0.1173

The information below is about IL_4V9F_088

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_44609.2

Basepair signature

cWW-cWW

Number of instances in this motif group

24

Unit IDs

7PWG|1|1|C|2303
7PWG|1|1|U|2304
*
7PWG|1|1|A|2361
7PWG|1|1|U|2362
7PWG|1|1|C|2363
7PWG|1|1|G|2364

Current chains

Chain 1

rRNA 28S

Nearby chains

Chain B

Ribosomal protein L3

Chain O

Ribosomal protein L13a

Chain V

Ribosomal protein L23