IL_7PWG_090

3D structure

PDB id

7PWG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of large subunit of Giardia lamblia ribosome at 2.7 A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

GUU*AGGAC

Length

8 nucleotides

Bulged bases

7PWG|1|1|G|2494, 7PWG|1|1|G|2495

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PWG_090 not in the Motif Atlas

Geometric match to IL_4J50_001

Geometric discrepancy: 0.301

The information below is about IL_4J50_001

Detailed Annotation

Isolated cWH basepair

Broad Annotation

Isolated cWH basepair

Motif group

IL_10892.2

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

58

Unit IDs

7PWG|1|1|G|2478
7PWG|1|1|U|2479
7PWG|1|1|U|2480
*
7PWG|1|1|A|2493
7PWG|1|1|G|2494
7PWG|1|1|G|2495
7PWG|1|1|A|2496
7PWG|1|1|C|2497

Current chains

Chain 1

rRNA 28S

Nearby chains

Chain R

Ribosomal protein L19

Chain d

Ribosomal protein L31B