IL_7PWG_095

3D structure

PDB id

7PWG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of large subunit of Giardia lamblia ribosome at 2.7 A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

UGUACG*CCGGG

Length

11 nucleotides

Bulged bases

7PWG|1|1|G|2672

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PWG_095 not in the Motif Atlas

Geometric match to IL_5TBW_133

Geometric discrepancy: 0.1147

The information below is about IL_5TBW_133

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_83162.8

Basepair signature

cWW-cWW-tSH-cWW-tHH-L

Number of instances in this motif group

4

Unit IDs

7PWG|1|1|U|2639
7PWG|1|1|G|2640
7PWG|1|1|U|2641
7PWG|1|1|A|2642
7PWG|1|1|C|2643
7PWG|1|1|G|2644
*
7PWG|1|1|C|2670
7PWG|1|1|C|2671
7PWG|1|1|G|2672
7PWG|1|1|G|2673
7PWG|1|1|G|2674

Current chains

Chain 1

rRNA 28S

Nearby chains

Chain B

Ribosomal protein L3

Chain W

Ribosomal protein L24A

Chain d

Ribosomal protein L31B