IL_7PWG_110

3D structure

PDB id

7PWG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of large subunit of Giardia lamblia ribosome at 2.7 A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

GUG*UUUUU

Length

8 nucleotides

Bulged bases

7PWG|1|1|U|2282

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PWG_110 not in the Motif Atlas

Homologous match to IL_8C3A_113

Geometric discrepancy: 0.1448

The information below is about IL_8C3A_113

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform with extra cWW

Motif group

IL_63959.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

18

Unit IDs

7PWG|1|1|G|2250
7PWG|1|1|U|2251
7PWG|1|1|G|2252
*
7PWG|1|1|U|2280
7PWG|1|1|U|2281
7PWG|1|1|U|2282
7PWG|1|1|U|2283
7PWG|1|1|U|2284

Current chains

Chain 1

rRNA 28S

Nearby chains

Chain B

Ribosomal protein L3

Chain I

Ribosomal protein L10