IL_7PWO_001

3D structure

PDB id

7PWO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Giardia lamblia ribosome at 2.75 A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

CC*GCG

Length

5 nucleotides

Bulged bases

7PWO|1|42|C|135

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PWO_001 not in the Motif Atlas

Geometric match to IL_4WF9_035

Geometric discrepancy: 0.3564

The information below is about IL_4WF9_035

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_05642.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

67

Unit IDs

7PWO|1|1|C|7
7PWO|1|1|C|8
*
7PWO|1|42|G|134
7PWO|1|42|C|135
7PWO|1|42|G|136

Current chains

Chain 1

rRNA 28S

Chain 42

rRNA 5.8S

Nearby chains

Chain G2

60S ribosomal protein L7a

Chain N2

Ribosomal protein L15

Chain X2

Ribosomal protein L23A