IL_7PWO_007

3D structure

PDB id

7PWO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Giardia lamblia ribosome at 2.75 A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

AG*CGCUGU

Length

8 nucleotides

Bulged bases

7PWO|1|1|U|126

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PWO_007 not in the Motif Atlas

Geometric match to IL_5TBW_007

Geometric discrepancy: 0.1329

The information below is about IL_5TBW_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_19724.3

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

4

Unit IDs

7PWO|1|1|A|118
7PWO|1|1|G|119
*
7PWO|1|1|C|123
7PWO|1|1|G|124
7PWO|1|1|C|125
7PWO|1|1|U|126
7PWO|1|1|G|127
7PWO|1|1|U|128

Current chains

Chain 1

rRNA 28S

Nearby chains

Chain 42

rRNA 5.8S

Chain G2

60S ribosomal protein L7a

Chain N2

Ribosomal protein L15