IL_7PWO_009

3D structure

PDB id

7PWO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Giardia lamblia ribosome at 2.75 A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

GAC*GC

Length

5 nucleotides

Bulged bases

7PWO|1|1|A|288

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PWO_009 not in the Motif Atlas

Homologous match to IL_8C3A_014

Geometric discrepancy: 0.1232

The information below is about IL_8C3A_014

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

7PWO|1|1|G|287
7PWO|1|1|A|288
7PWO|1|1|C|289
*
7PWO|1|42|G|26
7PWO|1|42|C|27

Current chains

Chain 1

rRNA 28S

Chain 42

rRNA 5.8S

Nearby chains

Chain C2

Ribosomal protein L4

Chain Y2

Ribosomal protein L26