IL_7PWO_012

3D structure

PDB id

7PWO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Giardia lamblia ribosome at 2.75 A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

CCG*CCCG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PWO_012 not in the Motif Atlas

Geometric match to IL_7A0S_019

Geometric discrepancy: 0.358

The information below is about IL_7A0S_019

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

Major groove platform

Motif group

IL_36931.2

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

24

Unit IDs

7PWO|1|1|C|363
7PWO|1|1|C|364
7PWO|1|1|G|365
*
7PWO|1|42|C|7
7PWO|1|42|C|8
7PWO|1|42|C|9
7PWO|1|42|G|10

Current chains

Chain 1

rRNA 28S

Chain 42

rRNA 5.8S

Nearby chains

Chain P2

Ribosomal protein L17