IL_7PWO_014

3D structure

PDB id

7PWO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Giardia lamblia ribosome at 2.75 A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

CC*GCG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PWO_014 not in the Motif Atlas

Geometric match to IL_4V9F_081

Geometric discrepancy: 0.2122

The information below is about IL_4V9F_081

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_15011.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

61

Unit IDs

7PWO|1|1|C|474
7PWO|1|1|C|475
*
7PWO|1|1|G|492
7PWO|1|1|C|493
7PWO|1|1|G|494

Current chains

Chain 1

rRNA 28S

Nearby chains

Chain Q2

Ribosomal protein L18

Chain b2

60S ribosomal protein L29