IL_7PWO_017

3D structure

PDB id

7PWO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Giardia lamblia ribosome at 2.75 A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

GC*GGC

Length

5 nucleotides

Bulged bases

7PWO|1|1|G|576

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PWO_017 not in the Motif Atlas

Geometric match to IL_4V9F_026

Geometric discrepancy: 0.1295

The information below is about IL_4V9F_026

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_28408.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

69

Unit IDs

7PWO|1|1|G|549
7PWO|1|1|C|550
*
7PWO|1|1|G|575
7PWO|1|1|G|576
7PWO|1|1|C|577

Current chains

Chain 1

rRNA 28S

Nearby chains

Chain A2

Ribosomal protein L2

Chain R2

Ribosomal protein L19

Chain p2

Ribosomal protein L37a