IL_7PWO_025

3D structure

PDB id

7PWO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Giardia lamblia ribosome at 2.75 A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

GA*UCC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PWO_025 not in the Motif Atlas

Geometric match to IL_7TZS_003

Geometric discrepancy: 0.1145

The information below is about IL_7TZS_003

Detailed Annotation

Minor groove platform related

Broad Annotation

Minor groove platform related

Motif group

IL_34520.4

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

68

Unit IDs

7PWO|1|1|G|711
7PWO|1|1|A|712
*
7PWO|1|1|U|762
7PWO|1|1|C|763
7PWO|1|1|C|764

Current chains

Chain 1

rRNA 28S

Nearby chains

Chain 3

5S ribosomal RNA; 5S rRNA

Chain D2

Ribosomal protein L5

Chain I2

Ribosomal protein L10

Chain T2

Ribosomal protein L21