IL_7PWO_045

3D structure

PDB id

7PWO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Giardia lamblia ribosome at 2.75 A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

CGCAG*CCCGG

Length

10 nucleotides

Bulged bases

7PWO|1|1|G|1405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PWO_045 not in the Motif Atlas

Geometric match to IL_6JXM_002

Geometric discrepancy: 0.3214

The information below is about IL_6JXM_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_14445.1

Basepair signature

cWW-L-tHS-L-R-cWW

Number of instances in this motif group

1

Unit IDs

7PWO|1|1|C|1368
7PWO|1|1|G|1369
7PWO|1|1|C|1370
7PWO|1|1|A|1371
7PWO|1|1|G|1372
*
7PWO|1|1|C|1402
7PWO|1|1|C|1403
7PWO|1|1|C|1404
7PWO|1|1|G|1405
7PWO|1|1|G|1406

Current chains

Chain 1

rRNA 28S

Nearby chains

Chain g2

Ribosomal protein L34