IL_7PWO_053

3D structure

PDB id

7PWO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Giardia lamblia ribosome at 2.75 A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

GCU*AAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PWO_053 not in the Motif Atlas

Homologous match to IL_8C3A_085

Geometric discrepancy: 0.0883

The information below is about IL_8C3A_085

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

7PWO|1|1|G|1571
7PWO|1|1|C|1572
7PWO|1|1|U|1573
*
7PWO|1|1|A|1594
7PWO|1|1|A|1595
7PWO|1|1|C|1596

Current chains

Chain 1

rRNA 28S

Nearby chains

Chain 2

Small subunit ribosomal RNA; SSU rRNA

Chain I1

40S ribosomal protein S8

Chain R2

Ribosomal protein L19