IL_7PWO_073

3D structure

PDB id

7PWO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Giardia lamblia ribosome at 2.75 A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

GAC*GC

Length

5 nucleotides

Bulged bases

7PWO|1|1|A|2138

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PWO_073 not in the Motif Atlas

Geometric match to IL_5TBW_013

Geometric discrepancy: 0.2827

The information below is about IL_5TBW_013

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

7PWO|1|1|G|2137
7PWO|1|1|A|2138
7PWO|1|1|C|2139
*
7PWO|1|1|G|2163
7PWO|1|1|C|2164

Current chains

Chain 1

rRNA 28S

Nearby chains

Chain o2

Ribosomal protein L44