IL_7PWO_078

3D structure

PDB id

7PWO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Giardia lamblia ribosome at 2.75 A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

CCGAG*CGACG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PWO_078 not in the Motif Atlas

Homologous match to IL_8C3A_114

Geometric discrepancy: 0.1363

The information below is about IL_8C3A_114

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65585.1

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

7PWO|1|1|C|2257
7PWO|1|1|C|2258
7PWO|1|1|G|2259
7PWO|1|1|A|2260
7PWO|1|1|G|2261
*
7PWO|1|1|C|2271
7PWO|1|1|G|2272
7PWO|1|1|A|2273
7PWO|1|1|C|2274
7PWO|1|1|G|2275

Current chains

Chain 1

rRNA 28S

Nearby chains

Chain I2

Ribosomal protein L10

Chain m2

Ubiquitin/Ribosomal protein L40e